HL_7ASM_070

3D structure

PDB id

7ASM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GCACGUGAAAU

Length

11 nucleotides

Bulged bases

7ASM|1|A|G|432, 7ASM|1|A|U|433

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ASM_070 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.3209

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

7ASM|1|A|G|428
7ASM|1|A|C|429
7ASM|1|A|A|430
7ASM|1|A|C|431
7ASM|1|A|G|432
7ASM|1|A|U|433
7ASM|1|A|G|434
7ASM|1|A|A|435
7ASM|1|A|A|436
7ASM|1|A|A|437
7ASM|1|A|U|438

Current chains

Chain A

23S rRNA

Nearby chains

Chain V

50S ribosomal protein L28