HL_7ASN_008

3D structure

PDB id

7ASN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S after 30 minutes incubation a 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.73 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

7ASN|1|A|A|354

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ASN_008 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.1126

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.4

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

7ASN|1|A|C|348
7ASN|1|A|U|349
7ASN|1|A|G|350
7ASN|1|A|G|351
7ASN|1|A|A|352
7ASN|1|A|A|353
7ASN|1|A|A|354
7ASN|1|A|G|355

Current chains

Chain A

23S

Nearby chains

Chain S

50S ribosomal protein L24