HL_7ASN_012

3D structure

PDB id

7ASN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S after 30 minutes incubation a 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.73 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

7ASN|1|A|G|457

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ASN_012 not in the Motif Atlas

Homologous match to HL_4WF9_014

Geometric discrepancy: 0.2322

The information below is about HL_4WF9_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7ASN|1|A|G|456
7ASN|1|A|G|457
7ASN|1|A|A|458
7ASN|1|A|C|459
7ASN|1|A|C|460
7ASN|1|A|A|461
7ASN|1|A|U|462
7ASN|1|A|C|463

Current chains

Chain A

23S

Nearby chains