HL_7ASO_016

3D structure

PDB id

7ASO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CCGCAAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ASO_016 not in the Motif Atlas

Geometric match to HL_4V90_032

Geometric discrepancy: 0.3667

The information below is about HL_4V90_032

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

7ASO|1|X|C|906
7ASO|1|X|C|907
7ASO|1|X|G|908
7ASO|1|X|C|909
7ASO|1|X|A|910
7ASO|1|X|A|911
7ASO|1|X|G|912
7ASO|1|X|G|913

Current chains

Chain X

16S

Nearby chains

Chain Y

Large subunit ribosomal RNA; LSU rRNA