HL_7ASO_034

3D structure

PDB id

7ASO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

AACAAGCUUGCUUGUU

Length

16 nucleotides

Bulged bases

7ASO|1|Y|G|283, 7ASO|1|Y|G|287

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ASO_034 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.2697

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7ASO|1|Y|A|278
7ASO|1|Y|A|279
7ASO|1|Y|C|280
7ASO|1|Y|A|281
7ASO|1|Y|A|282
7ASO|1|Y|G|283
7ASO|1|Y|C|284
7ASO|1|Y|U|285
7ASO|1|Y|U|286
7ASO|1|Y|G|287
7ASO|1|Y|C|288
7ASO|1|Y|U|289
7ASO|1|Y|U|290
7ASO|1|Y|G|291
7ASO|1|Y|U|292
7ASO|1|Y|U|293

Current chains

Chain Y

23S

Nearby chains

Chain c

50S ribosomal protein L28