HL_7ASO_035

3D structure

PDB id

7ASO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

7ASO|1|Y|A|354

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ASO_035 not in the Motif Atlas

Homologous match to HL_4WF9_010

Geometric discrepancy: 0.2003

The information below is about HL_4WF9_010

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_13999.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

21

Unit IDs

7ASO|1|Y|C|348
7ASO|1|Y|U|349
7ASO|1|Y|G|350
7ASO|1|Y|G|351
7ASO|1|Y|A|352
7ASO|1|Y|A|353
7ASO|1|Y|A|354
7ASO|1|Y|G|355

Current chains

Chain Y

23S

Nearby chains

Chain Z

50S ribosomal protein L24