HL_7ASO_051

3D structure

PDB id

7ASO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

GUGAUAAGGU

Length

10 nucleotides

Bulged bases

7ASO|1|Y|U|1002, 7ASO|1|Y|G|1005

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ASO_051 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.2723

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7ASO|1|Y|G|998
7ASO|1|Y|U|999
7ASO|1|Y|G|1000
7ASO|1|Y|A|1001
7ASO|1|Y|U|1002
7ASO|1|Y|A|1003
7ASO|1|Y|A|1004
7ASO|1|Y|G|1005
7ASO|1|Y|G|1006
7ASO|1|Y|U|1007

Current chains

Chain Y

23S

Nearby chains

Chain C

5S ribosomal RNA; 5S rRNA

Chain P

50S ribosomal protein L16