HL_7ASO_078

3D structure

PDB id

7ASO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CCUACAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ASO_078 not in the Motif Atlas

Homologous match to HL_4WF9_053

Geometric discrepancy: 0.1228

The information below is about HL_4WF9_053

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7ASO|1|Y|C|2382
7ASO|1|Y|C|2383
7ASO|1|Y|U|2384
7ASO|1|Y|A|2385
7ASO|1|Y|C|2386
7ASO|1|Y|A|2387
7ASO|1|Y|A|2388
7ASO|1|Y|G|2389

Current chains

Chain Y

23S

Nearby chains

Chain O

50S ribosomal protein L15

Chain b

50S ribosomal protein L27

Chain j

50S ribosomal protein L35