HL_7ASO_086

3D structure

PDB id

7ASO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

GUGCCAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ASO_086 not in the Motif Atlas

Geometric match to HL_5TBW_012

Geometric discrepancy: 0.3662

The information below is about HL_5TBW_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.1

Basepair signature

cWW-F-F

Number of instances in this motif group

7

Unit IDs

7ASO|1|Y|G|2727
7ASO|1|Y|U|2728
7ASO|1|Y|G|2729
7ASO|1|Y|C|2730
7ASO|1|Y|C|2731
7ASO|1|Y|A|2732
7ASO|1|Y|A|2733
7ASO|1|Y|C|2734

Current chains

Chain Y

23S

Nearby chains

Chain Q

50S ribosomal protein L17