HL_7ASP_055

3D structure

PDB id

7ASP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 50 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CGACAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ASP_055 not in the Motif Atlas

Homologous match to HL_5J7L_167

Geometric discrepancy: 0.1417

The information below is about HL_5J7L_167

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

7ASP|1|Y|C|1400
7ASP|1|Y|G|1401
7ASP|1|Y|A|1402
7ASP|1|Y|C|1403
7ASP|1|Y|A|1404
7ASP|1|Y|G|1405

Current chains

Chain Y

23S rRNA

Nearby chains

Chain B

50S ribosomal protein L34

Chain V

50S ribosomal protein L28