HL_7AZO_038

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

7AZO|1|16SB|G|907

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AZO_038 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.1205

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

7AZO|1|16SB|G|900
7AZO|1|16SB|G|901
7AZO|1|16SB|U|902
7AZO|1|16SB|A|903
7AZO|1|16SB|A|904
7AZO|1|16SB|U|905
7AZO|1|16SB|G|906
7AZO|1|16SB|G|907
7AZO|1|16SB|C|908

Current chains

Chain 16SB

16S rRNA

Nearby chains

Chain S17B

30S ribosomal protein S17

Chain S20B

30S ribosomal protein S20