HL_7AZO_039

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AZO_039 not in the Motif Atlas

Homologous match to HL_5J7L_007

Geometric discrepancy: 0.0864

The information below is about HL_5J7L_007

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

7AZO|1|16SB|U|937
7AZO|1|16SB|G|938
7AZO|1|16SB|A|939
7AZO|1|16SB|G|940
7AZO|1|16SB|A|941
7AZO|1|16SB|G|942

Current chains

Chain 16SB

16S rRNA

Nearby chains

Chain S12B

30S ribosomal protein S12

Chain S17B

30S ribosomal protein S17

Chain S4B

30S ribosomal protein S4

Chain S5B

30S ribosomal protein S5