HL_7AZO_057

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

7AZO|1|16SB|G|1722

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AZO_057 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.1279

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

7AZO|1|16SB|G|1717
7AZO|1|16SB|U|1718
7AZO|1|16SB|U|1719
7AZO|1|16SB|A|1720
7AZO|1|16SB|A|1721
7AZO|1|16SB|G|1722
7AZO|1|16SB|U|1723
7AZO|1|16SB|C|1724

Current chains

Chain 16SB

16S rRNA

Nearby chains

Chain S2B

30S ribosomal protein S2

Chain S7B

30S ribosomal protein S7