HL_7AZO_079

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AZO_079 not in the Motif Atlas

Geometric match to HL_5J7L_147

Geometric discrepancy: 0.062

The information below is about HL_5J7L_147

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

7AZO|1|23SA|C|490
7AZO|1|23SA|G|491
7AZO|1|23SA|U|492
7AZO|1|23SA|G|493
7AZO|1|23SA|A|494
7AZO|1|23SA|G|495

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain L34A

50S ribosomal protein L34

Chain L4A

50S ribosomal protein L4