HL_7AZO_092

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAUAACG

Length

8 nucleotides

Bulged bases

7AZO|1|23SA|U|1005, 7AZO|1|23SA|C|1008

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AZO_092 not in the Motif Atlas

Geometric match to HL_7RQB_027

Geometric discrepancy: 0.068

The information below is about HL_7RQB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

7AZO|1|23SA|C|1002
7AZO|1|23SA|G|1003
7AZO|1|23SA|A|1004
7AZO|1|23SA|U|1005
7AZO|1|23SA|A|1006
7AZO|1|23SA|A|1007
7AZO|1|23SA|C|1008
7AZO|1|23SA|G|1009

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain 5SA

5S ribosomal RNA; 5S rRNA

Chain L16A

50S ribosomal protein L16