HL_7AZO_095

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCGUUAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AZO_095 not in the Motif Atlas

Geometric match to HL_5WWT_001

Geometric discrepancy: 0.3734

The information below is about HL_5WWT_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_45175.1

Basepair signature

cWW-cWS-F-F

Number of instances in this motif group

5

Unit IDs

7AZO|1|23SA|G|1139
7AZO|1|23SA|C|1140
7AZO|1|23SA|G|1141
7AZO|1|23SA|U|1142
7AZO|1|23SA|U|1145
7AZO|1|23SA|A|1146
7AZO|1|23SA|G|1147
7AZO|1|23SA|C|1148

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain L6A

50S ribosomal protein L6