HL_7AZO_098

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AZO_098 not in the Motif Atlas

Geometric match to HL_7RQB_033

Geometric discrepancy: 0.0561

The information below is about HL_7RQB_033

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41998.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

69

Unit IDs

7AZO|1|23SA|G|1330
7AZO|1|23SA|U|1331
7AZO|1|23SA|G|1332
7AZO|1|23SA|A|1333
7AZO|1|23SA|G|1334
7AZO|1|23SA|A|1335
7AZO|1|23SA|A|1336
7AZO|1|23SA|U|1337
7AZO|1|23SA|C|1338

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain L17A

50S ribosomal protein L17

Chain L22A

50S ribosomal protein L22