HL_7AZO_099

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGUCGUC

Length

7 nucleotides

Bulged bases

7AZO|1|23SA|G|1374, 7AZO|1|23SA|U|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AZO_099 not in the Motif Atlas

Geometric match to HL_7RQB_034

Geometric discrepancy: 0.0718

The information below is about HL_7RQB_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46680.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

27

Unit IDs

7AZO|1|23SA|G|1373
7AZO|1|23SA|G|1374
7AZO|1|23SA|U|1375
7AZO|1|23SA|C|1376
7AZO|1|23SA|G|1377
7AZO|1|23SA|U|1378
7AZO|1|23SA|C|1379

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain L17A

50S ribosomal protein L17

Chain L22A

50S ribosomal protein L22