HL_7AZO_115

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

7AZO|1|23SA|U|1980

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AZO_115 not in the Motif Atlas

Geometric match to HL_7A0S_048

Geometric discrepancy: 0.1528

The information below is about HL_7A0S_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

7AZO|1|23SA|G|1974
7AZO|1|23SA|G|1975
7AZO|1|23SA|U|1976
7AZO|1|23SA|A|1977
7AZO|1|23SA|A|1978
7AZO|1|23SA|G|1979
7AZO|1|23SA|U|1980
7AZO|1|23SA|U|1981
7AZO|1|23SA|C|1982

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain 16SA

Small subunit ribosomal RNA; SSU rRNA

Chain L14A

50S ribosomal protein L14