HL_7AZO_120

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

7AZO|1|23SA|A|2283, 7AZO|1|23SA|C|2290

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AZO_120 not in the Motif Atlas

Geometric match to HL_7RQB_054

Geometric discrepancy: 0.0628

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

7AZO|1|23SA|C|2279
7AZO|1|23SA|U|2280
7AZO|1|23SA|A|2281
7AZO|1|23SA|A|2282
7AZO|1|23SA|A|2283
7AZO|1|23SA|A|2284
7AZO|1|23SA|G|2285
7AZO|1|23SA|G|2286
7AZO|1|23SA|U|2287
7AZO|1|23SA|A|2288
7AZO|1|23SA|A|2289
7AZO|1|23SA|C|2290
7AZO|1|23SA|G|2291

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain L16A

50S ribosomal protein L16

Chain L27A

50S ribosomal protein L27