HL_7AZO_139

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGGAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AZO_139 not in the Motif Atlas

Geometric match to HL_7RQB_004

Geometric discrepancy: 0.2504

The information below is about HL_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79921.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

15

Unit IDs

7AZO|1|23SB|G|136
7AZO|1|23SB|G|137
7AZO|1|23SB|G|138
7AZO|1|23SB|A|139
7AZO|1|23SB|A|140
7AZO|1|23SB|C|141

Current chains

Chain 23SB

23S rRNA

Nearby chains

Chain L23B

50S ribosomal protein L23

Chain L29B

50S ribosomal protein L29