HL_7AZO_213

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

G(5MU)UCGAUUC

Length

9 nucleotides

Bulged bases

7AZO|1|ASIB|U|55

QA status

Modified nucleotides: 5MU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AZO_213 not in the Motif Atlas

Geometric match to HL_4P5J_003

Geometric discrepancy: 0.3565

The information below is about HL_4P5J_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

7AZO|1|ASIB|G|53
7AZO|1|ASIB|5MU|54
7AZO|1|ASIB|U|55
7AZO|1|ASIB|C|56
7AZO|1|ASIB|G|57
7AZO|1|ASIB|A|58
7AZO|1|ASIB|U|59
7AZO|1|ASIB|U|60
7AZO|1|ASIB|C|61

Current chains

Chain ASIB

Phe-tRNA

Nearby chains

Chain 23SB

Large subunit ribosomal RNA; LSU rRNA

Chain L16B

50S ribosomal protein L16