HL_7AZO_216

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUUCGAUUC

Length

9 nucleotides

Bulged bases

7AZO|1|ESIA|C|56

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AZO_216 not in the Motif Atlas

Geometric match to HL_3AMU_003

Geometric discrepancy: 0.3938

The information below is about HL_3AMU_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.4

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

137

Unit IDs

7AZO|1|ESIA|G|53
7AZO|1|ESIA|U|54
7AZO|1|ESIA|U|55
7AZO|1|ESIA|C|56
7AZO|1|ESIA|G|57
7AZO|1|ESIA|A|58
7AZO|1|ESIA|U|59
7AZO|1|ESIA|U|60
7AZO|1|ESIA|C|61

Current chains

Chain ESIA

Phe-tRNA

Nearby chains

Chain 23SA

Large subunit ribosomal RNA; LSU rRNA