HL_7AZO_223

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAG(H2U)CGGUAG

Length

10 nucleotides

Bulged bases

7AZO|1|PSIB|C|17, 7AZO|1|PSIB|G|18, 7AZO|1|PSIB|G|19, 7AZO|1|PSIB|U|20

QA status

Modified nucleotides: H2U

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AZO_223 not in the Motif Atlas

Geometric match to HL_4V90_032

Geometric discrepancy: 0.1669

The information below is about HL_4V90_032

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

7AZO|1|PSIB|C|13
7AZO|1|PSIB|A|14
7AZO|1|PSIB|G|15
7AZO|1|PSIB|H2U|16
7AZO|1|PSIB|C|17
7AZO|1|PSIB|G|18
7AZO|1|PSIB|G|19
7AZO|1|PSIB|U|20
7AZO|1|PSIB|A|21
7AZO|1|PSIB|G|22

Current chains

Chain PSIB

Phe-tRNA

Nearby chains

Chain 23SB

Large subunit ribosomal RNA; LSU rRNA

Chain L5B

50S ribosomal protein L5