HL_7AZO_253

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GACGGAAAU

Length

9 nucleotides

Bulged bases

7AZO|1|23SB|G|2323

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AZO_253 not in the Motif Atlas

Homologous match to HL_9DFE_198

Geometric discrepancy: 0.494

The information below is about HL_9DFE_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

7AZO|1|23SB|G|2319
7AZO|1|23SB|A|2320
7AZO|1|23SB|C|2321
7AZO|1|23SB|G|2322
7AZO|1|23SB|G|2323
7AZO|1|23SB|A|2324
7AZO|1|23SB|A|2325
7AZO|1|23SB|A|2326
7AZO|1|23SB|U|2327

Current chains

Chain 23SB

23S rRNA

Nearby chains

Chain L5B

50S ribosomal protein L5