HL_7AZO_254

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUCAG(H2U)CGG(H2U)AGAG

Length

14 nucleotides

Bulged bases

7AZO|1|TRNA|C|17, 7AZO|1|TRNA|G|18, 7AZO|1|TRNA|G|19, 7AZO|1|TRNA|H2U|20

QA status

Modified nucleotides: H2U

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AZO_254 not in the Motif Atlas

Homologous match to HL_7KJT_001

Geometric discrepancy: 0.5063

The information below is about HL_7KJT_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68572.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

7AZO|1|TRNA|C|11
7AZO|1|TRNA|U|12
7AZO|1|TRNA|C|13
7AZO|1|TRNA|A|14
7AZO|1|TRNA|G|15
7AZO|1|TRNA|H2U|16
7AZO|1|TRNA|C|17
7AZO|1|TRNA|G|18
7AZO|1|TRNA|G|19
7AZO|1|TRNA|H2U|20
7AZO|1|TRNA|A|21
7AZO|1|TRNA|G|22
7AZO|1|TRNA|A|23
7AZO|1|TRNA|G|24

Current chains

Chain TRNA

Phe-tRNA

Nearby chains

Chain 5SA

5S ribosomal RNA; 5S rRNA