HL_7AZS_015

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGGUGAAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AZS_015 not in the Motif Atlas

Homologous match to HL_4LFB_015

Geometric discrepancy: 0.146

The information below is about HL_4LFB_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

7AZS|1|16SA|C|1318
7AZS|1|16SA|G|1319
7AZS|1|16SA|G|1320
7AZS|1|16SA|U|1321
7AZS|1|16SA|G|1322
7AZS|1|16SA|A|1323
7AZS|1|16SA|A|1324
7AZS|1|16SA|A|1325
7AZS|1|16SA|U|1326
7AZS|1|16SA|G|1327

Current chains

Chain 16SA

16S rRNA

Nearby chains

Chain 23SA

Large subunit ribosomal RNA; LSU rRNA

Chain ESIA

Transfer RNA; tRNA

Chain MRNA

mRNA

Chain S11A

30S ribosomal protein S11

Chain S7A

30S ribosomal protein S7