HL_7B5K_116
3D structure
- PDB id
- 7B5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAAAGCGUAAUAGCUC
- Length
- 16 nucleotides
- Bulged bases
- 7B5K|1|A|A|1088, 7B5K|1|A|A|1089
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7B5K_116 not in the Motif Atlas
- Homologous match to HL_5J7L_162
- Geometric discrepancy: 0.4271
- The information below is about HL_5J7L_162
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_04775.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
7B5K|1|A|G|1087
7B5K|1|A|A|1088
7B5K|1|A|A|1089
7B5K|1|A|A|1090
7B5K|1|A|G|1091
7B5K|1|A|C|1092
7B5K|1|A|G|1093
7B5K|1|A|U|1094
7B5K|1|A|A|1095
7B5K|1|A|A|1096
7B5K|1|A|U|1097
7B5K|1|A|A|1098
7B5K|1|A|G|1099
7B5K|1|A|C|1100
7B5K|1|A|U|1101
7B5K|1|A|C|1102
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 4
- 50S ribosomal protein L36
Coloring options: