HL_7B7D_028

3D structure

PDB id

7B7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

7B7D|1|2|G|1243, 7B7D|1|2|G|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7B7D_028 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.2378

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

7B7D|1|2|A|1238
7B7D|1|2|U|1239
7B7D|1|2|U|1240
7B7D|1|2|G|1241
7B7D|1|2|A|1242
7B7D|1|2|G|1243
7B7D|1|2|A|1244
7B7D|1|2|G|1245
7B7D|1|2|C|1246
7B7D|1|2|U|1247

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

40S ribosomal protein S15

Chain M

40S ribosomal protein S29-A

Chain N

Ubiquitin-40S ribosomal protein S31