HL_7B7D_058

3D structure

PDB id

7B7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

7B7D|1|LA|U|879, 7B7D|1|LA|A|883, 7B7D|1|LA|A|884

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7B7D_058 not in the Motif Atlas

Homologous match to HL_5TBW_020

Geometric discrepancy: 0.0749

The information below is about HL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

7B7D|1|LA|A|876
7B7D|1|LA|C|877
7B7D|1|LA|G|878
7B7D|1|LA|U|879
7B7D|1|LA|G|880
7B7D|1|LA|C|881
7B7D|1|LA|A|882
7B7D|1|LA|A|883
7B7D|1|LA|A|884
7B7D|1|LA|U|885

Current chains

Chain LA

25S rRNA

Nearby chains

Chain LE

60S ribosomal protein L3

Chain LR

60S ribosomal protein L17-A

Chain Lf

60S ribosomal protein L37-A