HL_7B7D_088

3D structure

PDB id

7B7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

7B7D|1|LA|U|2298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7B7D_088 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.1075

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

7B7D|1|LA|U|2292
7B7D|1|LA|C|2293
7B7D|1|LA|U|2294
7B7D|1|LA|A|2295
7B7D|1|LA|A|2296
7B7D|1|LA|U|2297
7B7D|1|LA|U|2298
7B7D|1|LA|A|2299
7B7D|1|LA|G|2300

Current chains

Chain LA

25S rRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain Lr

60S ribosomal protein L23-A