HL_7B7D_100

3D structure

PDB id

7B7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7B7D_100 not in the Motif Atlas

Homologous match to HL_8C3A_062

Geometric discrepancy: 0.1612

The information below is about HL_8C3A_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7B7D|1|LA|C|2840
7B7D|1|LA|G|2841
7B7D|1|LA|U|2842
7B7D|1|LA|U|2843
7B7D|1|LA|C|2844
7B7D|1|LA|A|2845
7B7D|1|LA|U|2846
7B7D|1|LA|A|2847
7B7D|1|LA|G|2848

Current chains

Chain LA

25S rRNA

Nearby chains

Chain LL

60S ribosomal protein L10

Chain Li

Ubiquitin-60S ribosomal protein L40

Chain Sm

Transfer RNA; tRNA