HL_7BGE_009
3D structure
- PDB id
- 7BGE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus 30S ribosomal subunit in presence of spermidine (head only)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CUGCAACUCG
- Length
- 10 nucleotides
- Bulged bases
- 7BGE|1|a|C|1328
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7BGE_009 not in the Motif Atlas
- Homologous match to HL_5J7L_028
- Geometric discrepancy: 0.3062
- The information below is about HL_5J7L_028
- Detailed Annotation
- T-loop with 3 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_02887.3
- Basepair signature
- cWW-tWH-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
7BGE|1|a|C|1325
7BGE|1|a|U|1326
7BGE|1|a|G|1327
7BGE|1|a|C|1328
7BGE|1|a|A|1329
7BGE|1|a|A|1330
7BGE|1|a|C|1331
7BGE|1|a|U|1332
7BGE|1|a|C|1333
7BGE|1|a|G|1334
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain m
- 30S ribosomal protein S13
- Chain n
- 30S ribosomal protein S14 type Z
- Chain s
- 30S ribosomal protein S19
Coloring options: