HL_7BHP_018

3D structure

PDB id

7BHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human Ebp1 - 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

7BHP|1|L5|C|1325

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7BHP_018 not in the Motif Atlas

Homologous match to HL_8C3A_014

Geometric discrepancy: 0.2125

The information below is about HL_8C3A_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

7BHP|1|L5|U|1317
7BHP|1|L5|C|1318
7BHP|1|L5|U|1319
7BHP|1|L5|U|1320
7BHP|1|L5|G|1321
7BHP|1|L5|A|1322
7BHP|1|L5|A|1323
7BHP|1|L5|A|1324
7BHP|1|L5|C|1325
7BHP|1|L5|A|1326

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain La

60S ribosomal protein L27a

Chain Le

60S ribosomal protein L32