HL_7BHP_038

3D structure

PDB id

7BHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human Ebp1 - 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCCUC

Length

5 nucleotides

Bulged bases

7BHP|1|L5|C|2488, 7BHP|1|L5|U|2490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7BHP_038 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3338

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

7BHP|1|L5|G|2487
7BHP|1|L5|C|2488
7BHP|1|L5|C|2489
7BHP|1|L5|U|2490
7BHP|1|L5|C|2491

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA