HL_7BHP_044

3D structure

PDB id

7BHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human Ebp1 - 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGGUUCCGG

Length

9 nucleotides

Bulged bases

7BHP|1|L5|U|2708, 7BHP|1|L5|G|2711

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7BHP_044 not in the Motif Atlas

Geometric match to HL_2ZZN_004

Geometric discrepancy: 0.1662

The information below is about HL_2ZZN_004

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_57684.1

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

7BHP|1|L5|C|2704
7BHP|1|L5|G|2705
7BHP|1|L5|G|2706
7BHP|1|L5|U|2707
7BHP|1|L5|U|2708
7BHP|1|L5|C|2709
7BHP|1|L5|C|2710
7BHP|1|L5|G|2711
7BHP|1|L5|G|2712

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain A

Proliferation-associated protein 2G4

Chain LR

60S ribosomal protein L19

Chain LU

60S ribosomal protein L22