HL_7BL6_026

3D structure

PDB id

7BL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S-ObgE-GMPPNP particle

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUGCUAACGU

Length

10 nucleotides

Bulged bases

7BL6|1|A|U|958, 7BL6|1|A|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7BL6_026 not in the Motif Atlas

Geometric match to HL_5UD5_002

Geometric discrepancy: 0.2653

The information below is about HL_5UD5_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_77082.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

8

Unit IDs

7BL6|1|A|G|954
7BL6|1|A|U|955
7BL6|1|A|G|956
7BL6|1|A|C|957
7BL6|1|A|U|958
7BL6|1|A|A|959
7BL6|1|A|A|960
7BL6|1|A|C|961
7BL6|1|A|G|962
7BL6|1|A|U|963

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain M

50S ribosomal protein L16