HL_7BL6_075

3D structure

PDB id

7BL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S-ObgE-GMPPNP particle

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUCGGACAU

Length

9 nucleotides

Bulged bases

7BL6|1|A|U|2305, 7BL6|1|A|A|2309, 7BL6|1|A|C|2310

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7BL6_075 not in the Motif Atlas

Homologous match to HL_5J7L_219

Geometric discrepancy: 0.5456

The information below is about HL_5J7L_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

7BL6|1|A|G|2304
7BL6|1|A|U|2305
7BL6|1|A|C|2306
7BL6|1|A|G|2307
7BL6|1|A|G|2308
7BL6|1|A|A|2309
7BL6|1|A|C|2310
7BL6|1|A|A|2311
7BL6|1|A|U|2312

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L5