HL_7BOD_017

3D structure

PDB id

7BOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state M (body domain)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

GAUUAGAUACC

Length

11 nucleotides

Bulged bases

7BOD|1|A|U|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7BOD_017 not in the Motif Atlas

Homologous match to HL_5J7L_017

Geometric discrepancy: 0.0822

The information below is about HL_5J7L_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

7BOD|1|A|G|786
7BOD|1|A|A|787
7BOD|1|A|U|788
7BOD|1|A|U|789
7BOD|1|A|A|790
7BOD|1|A|G|791
7BOD|1|A|A|792
7BOD|1|A|U|793
7BOD|1|A|A|794
7BOD|1|A|C|795
7BOD|1|A|C|796

Current chains

Chain A

16S rRNA (body domain of 30S subunit)

Nearby chains

Chain K

30S ribosomal protein S11

Chain U

30S ribosomal protein S21