3D structure

PDB id
7BOD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Bacterial 30S ribosomal subunit assembly complex state M (body domain)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.88 Å

Loop

Sequence
GAUUAGAUACC
Length
11 nucleotides
Bulged bases
7BOD|1|A|U|793
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7BOD_017 not in the Motif Atlas
Homologous match to HL_5J7L_017
Geometric discrepancy: 0.0822
The information below is about HL_5J7L_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75293.5
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
11

Unit IDs

7BOD|1|A|G|786
7BOD|1|A|A|787
7BOD|1|A|U|788
7BOD|1|A|U|789
7BOD|1|A|A|790
7BOD|1|A|G|791
7BOD|1|A|A|792
7BOD|1|A|U|793
7BOD|1|A|A|794
7BOD|1|A|C|795
7BOD|1|A|C|796

Current chains

Chain A
16S rRNA (body domain of 30S subunit)

Nearby chains

Chain K
30S ribosomal protein S11
Chain U
30S ribosomal protein S21

Coloring options:


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