HL_7BT6_020
3D structure
- PDB id
- 7BT6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 Angstroms resolution(state R1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.12 Å
Loop
- Sequence
- GACGUGCAAAUC
- Length
- 12 nucleotides
- Bulged bases
- 7BT6|1|1|U|879, 7BT6|1|1|A|883, 7BT6|1|1|A|884
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7BT6_020 not in the Motif Atlas
- Geometric match to HL_8C3A_022
- Geometric discrepancy: 0.185
- The information below is about HL_8C3A_022
- Detailed Annotation
- Externally structured
- Broad Annotation
- Externally structured
- Motif group
- HL_96426.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 4
Unit IDs
7BT6|1|1|G|875
7BT6|1|1|A|876
7BT6|1|1|C|877
7BT6|1|1|G|878
7BT6|1|1|U|879
7BT6|1|1|G|880
7BT6|1|1|C|881
7BT6|1|1|A|882
7BT6|1|1|A|883
7BT6|1|1|A|884
7BT6|1|1|U|885
7BT6|1|1|C|886
Current chains
- Chain 1
- RDN25-1 rRNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain P
- 60S ribosomal protein L17-A
- Chain j
- 60S ribosomal protein L37-A
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