HL_7BT6_025
3D structure
- PDB id
- 7BT6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 Angstroms resolution(state R1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.12 Å
Loop
- Sequence
- GGUAAGC
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7BT6_025 not in the Motif Atlas
- Geometric match to HL_4V9F_039
- Geometric discrepancy: 0.3035
- The information below is about HL_4V9F_039
- Detailed Annotation
- Other HL
- Broad Annotation
- Other HL
- Motif group
- HL_77436.5
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 23
Unit IDs
7BT6|1|1|G|1126
7BT6|1|1|G|1127
7BT6|1|1|U|1128
7BT6|1|1|A|1129
7BT6|1|1|A|1130
7BT6|1|1|G|1131
7BT6|1|1|C|1132
Current chains
- Chain 1
- RDN25-1 rRNA
Nearby chains
- Chain b
- Nucleolar GTP-binding protein 1
- Chain m
- Nucleolar GTP-binding protein 2
- Chain r
- Ribosome biogenesis protein NSA2
- Chain w
- Regulator of ribosome biosynthesis
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