HL_7BT6_037

3D structure

PDB id

7BT6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 Angstroms resolution(state R1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.12 Å

Loop

Sequence

GUUUAUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7BT6_037 not in the Motif Atlas

Homologous match to HL_5TBW_038

Geometric discrepancy: 0.1201

The information below is about HL_5TBW_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75033.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

7BT6|1|1|G|1719
7BT6|1|1|U|1720
7BT6|1|1|U|1721
7BT6|1|1|U|1722
7BT6|1|1|A|1723
7BT6|1|1|U|1724
7BT6|1|1|C|1725

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain R

60S ribosomal protein L19-A

Chain p

60S ribosomal protein L43-A