HL_7BT6_046

3D structure

PDB id

7BT6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 Angstroms resolution(state R1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.12 Å

Loop

Sequence

CAGAAAGUG

Length

9 nucleotides

Bulged bases

7BT6|1|1|A|2166, 7BT6|1|1|G|2169, 7BT6|1|1|U|2170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7BT6_046 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.122

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7BT6|1|1|C|2163
7BT6|1|1|A|2164
7BT6|1|1|G|2165
7BT6|1|1|A|2166
7BT6|1|1|A|2167
7BT6|1|1|A|2168
7BT6|1|1|G|2169
7BT6|1|1|U|2170
7BT6|1|1|G|2171

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain N

60S ribosomal protein L15-A