HL_7BT6_072
3D structure
- PDB id
- 7BT6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 Angstroms resolution(state R1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.12 Å
Loop
- Sequence
- GUGUAGUGGGUGACCAUACGC
- Length
- 21 nucleotides
- Bulged bases
- 7BT6|1|3|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7BT6_072 not in the Motif Atlas
- Geometric match to HL_8C3A_022
- Geometric discrepancy: 0.2299
- The information below is about HL_8C3A_022
- Detailed Annotation
- Externally structured
- Broad Annotation
- Externally structured
- Motif group
- HL_96426.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 4
Unit IDs
7BT6|1|3|G|80
7BT6|1|3|U|81
7BT6|1|3|G|82
7BT6|1|3|U|83
7BT6|1|3|A|84
7BT6|1|3|G|85
7BT6|1|3|U|86
7BT6|1|3|G|87
7BT6|1|3|G|88
7BT6|1|3|G|89
7BT6|1|3|U|90
7BT6|1|3|G|91
7BT6|1|3|A|92
7BT6|1|3|C|93
7BT6|1|3|C|94
7BT6|1|3|A|95
7BT6|1|3|U|96
7BT6|1|3|A|97
7BT6|1|3|C|98
7BT6|1|3|G|99
7BT6|1|3|C|100
Current chains
- Chain 3
- RDN5-2 rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain v
- Ribosome biogenesis protein RPF2
Coloring options: