HL_7BTB_041

3D structure

PDB id

7BTB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

CGCAGCAG

Length

8 nucleotides

Bulged bases

7BTB|1|1|C|1846, 7BTB|1|1|G|1848, 7BTB|1|1|A|1850

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7BTB_041 not in the Motif Atlas

Homologous match to HL_5TBW_041

Geometric discrepancy: 0.2671

The information below is about HL_5TBW_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56817.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

7BTB|1|1|C|1844
7BTB|1|1|G|1845
7BTB|1|1|C|1846
7BTB|1|1|A|1847
7BTB|1|1|G|1848
7BTB|1|1|C|1849
7BTB|1|1|A|1850
7BTB|1|1|G|1851

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain P

60S ribosomal protein L17-A

Chain j

60S ribosomal protein L37-A