HL_7BV8_012

3D structure

PDB id

7BV8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mature 50S ribosomal subunit from RrmJ knock out E.coli strain

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

7BV8|1|A|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7BV8_012 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.1698

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

7BV8|1|A|A|382
7BV8|1|A|C|383
7BV8|1|A|A|384
7BV8|1|A|C|385
7BV8|1|A|G|386
7BV8|1|A|U|387
7BV8|1|A|G|388
7BV8|1|A|G|389
7BV8|1|A|U|390
7BV8|1|A|A|391
7BV8|1|A|U|392

Current chains

Chain A

23S rRNA

Nearby chains

Chain Y

50S ribosomal protein L28