HL_7CPJ_014

3D structure

PDB id

7CPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

ycbZ-stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

7CPJ|1|A|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7CPJ_014 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.1514

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

7CPJ|1|A|A|382
7CPJ|1|A|C|383
7CPJ|1|A|A|384
7CPJ|1|A|C|385
7CPJ|1|A|G|386
7CPJ|1|A|U|387
7CPJ|1|A|G|388
7CPJ|1|A|G|389
7CPJ|1|A|U|390
7CPJ|1|A|A|391
7CPJ|1|A|U|392

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L35

Chain X

50S ribosomal protein L28