HL_7CPJ_042

3D structure

PDB id

7CPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

ycbZ-stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGAGAAU

Length

7 nucleotides

Bulged bases

7CPJ|1|A|A|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7CPJ_042 not in the Motif Atlas

Homologous match to HL_5J7L_174

Geometric discrepancy: 0.1292

The information below is about HL_5J7L_174

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

7CPJ|1|A|A|1630
7CPJ|1|A|G|1631
7CPJ|1|A|A|1632
7CPJ|1|A|G|1633
7CPJ|1|A|A|1634
7CPJ|1|A|A|1635
7CPJ|1|A|U|1636

Current chains

Chain A

23S ribosomal RNA

Nearby chains