HL_7CPU_015

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

7CPU|1|L5|C|1140

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7CPU_015 not in the Motif Atlas

Homologous match to HL_8C3A_014

Geometric discrepancy: 0.0639

The information below is about HL_8C3A_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

7CPU|1|L5|U|1132
7CPU|1|L5|C|1133
7CPU|1|L5|U|1134
7CPU|1|L5|U|1135
7CPU|1|L5|G|1136
7CPU|1|L5|A|1137
7CPU|1|L5|A|1138
7CPU|1|L5|A|1139
7CPU|1|L5|C|1140
7CPU|1|L5|A|1141

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain La

60S ribosomal protein L27a

Chain Le

60S ribosomal protein L32