HL_7CPU_018

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CGCCCGG

Length

7 nucleotides

Bulged bases

7CPU|1|L5|C|1222, 7CPU|1|L5|G|1225

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7CPU_018 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.1338

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7CPU|1|L5|C|1220
7CPU|1|L5|G|1221
7CPU|1|L5|C|1222
7CPU|1|L5|C|1223
7CPU|1|L5|C|1224
7CPU|1|L5|G|1225
7CPU|1|L5|G|1226

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain Lb

60S ribosomal protein L29